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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.6KG314100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 326aa MW: 36519.5 Da PI: 5.1589 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG314100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 52.7 | 1.1e-16 | 28 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
W++ e+ +Li+a+ e++++l+rg+lk+++Wee ++ + ++r + +qC++k+e+l+kry+ ++++ s + +f+
Pavir.6KG314100.1.p 28 WSELETFHLIDAYDERWTALGRGQLKAQQWEELAADVaarcaatPGVAVHRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFR 111
************************************9999997744455555******************9998875......5899999 PP
trihelix 84 qle 86
+++
Pavir.6KG314100.1.p 112 RMD 114
998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MMAAGAHDDA DEPPRRFALK KSAPAQPWSE LETFHLIDAY DERWTALGRG QLKAQQWEEL 60 AADVAARCAA TPGVAVHRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP 120 LAASAAYPPA AGSPTGAASD EEEEEEEEEE EEEENEEQEE EEEELVPRNN NTRSINGIIR 180 EFGSGLAPRH PQLQLQQPPS SITPSTAPPR KRVAYEAFQA KAAAAAVAAD KAKEEEVELV 240 RRPSGRGGTN TQLSAVLRDF SEGFMRLERR RMEMQWDIER GWQETEARHA KMLQDAQRQL 300 RDTVAASFAL PPKKARRDYG SSGDS*
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