 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.6KG296200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 505aa MW: 51917.3 Da PI: 8.449 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6KG296200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.8 | 3.9e-18 | 311 | 365 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k
Pavir.6KG296200.1.p 311 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 365
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 127.2 | 7.1e-41 | 311 | 401 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +
Pavir.6KG296200.1.p 311 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-A 399
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 lk 92
lk
Pavir.6KG296200.1.p 400 LK 401
65 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MLPPLPRSLA AAGGSAATAA LAWPCQPGPI RKGEHGSAVP IQHPWPCAPA VFFFNPALMI 60
RSPPLPLPAP FCRATHVRSS NPCPAGSKPS PPARRDTDTS SGLVHPRLSS ASPCSLVASS 120
LTLAVPHSWC GGMELGLSLG EPDAGRAAAP ELGLGLGVGA AGRGDDARRG SGAAARAGAG 180
ARWWAAPVAE PEPAVRLSLV PSSSLGLHWA PPPSSDCGGR SSEAPARGFD VNRAPSAAAS 240
AFAALEEEDD DEEDPGAGAL SSSSPNDSAG SFPLDLGRRA AAHAEAAAAR ACGERSSSRA 300
SDEDEGASAA RKKLRLSKEQ SAFLEESFKE HSTLNPKQKA ALAKQLNLRP RQVEVWFQNR 360
RARTKLKQTE VDCEYLKRCC EALTEENRRL HKELAELRAL KTAPPFYMHL PATTLSMCPS 420
CERVASNPTS TAASTSAPAS SAPPAPTAAA TSSSSSAAAV TATATAARGE PRPSSFAALF 480
AATRSFPLAS QSRPPAPAPA SNCL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 359 | 367 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK241196 | 1e-163 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
