PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG274200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 351aa    MW: 36011.7 Da    PI: 7.3282
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG274200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.7e-3247101558
          ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          +Y+eClkNhAa+lGgha+DGCgEfmp+++++ +++ +l+CaACgCHRnFHRr +e
  Pavir.6KG274200.1.p  47 VYRECLKNHAARLGGHALDGCGEFMPAPEADpADPGSLRCAACGCHRNFHRRVPE 101
                          7******************************9********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-2747100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-214898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5764899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.0E-294898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.29E-15208272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27211273IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-22215270IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAVVDVKYM PALFLNGGGA GAAVAAGKKM RPAAAAAAAW GAGEAGVYRE CLKNHAARLG  60
GHALDGCGEF MPAPEADPAD PGSLRCAACG CHRNFHRRVP EAPPSPPLLA LPPPPPPQPS  120
AARDARALRG EEAPEDRLPA AFDDETESSD EEGSDFDEDR PLSPLPAPAV GPPPGYLPPA  180
PHMRLALGAG APGASTPAPP PPGPAAPPVA AAAPKRFRTK FSPEQKQRMQ ALSERLGWRL  240
QKRDEAVVDE SCREIGVTKG VFKVWMHNNK HNFVAGHSAR RSASSSSAAA VPPPHATAAA  300
PPAAPAPPPP PPPPAPVHAD FNINGAADYF RRVVHPGPSV ASGADSPLSA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-202152721875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.135450.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG274200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9640701e-88EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822641.11e-131zinc-finger homeodomain protein 9-like isoform X2
SwissprotQ6Z5284e-78ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A2T7D7R51e-129A0A2T7D7R5_9POAL; Uncharacterized protein
STRINGGRMZM2G438438_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-26zinc finger homeodomain 1