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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG273500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 294aa MW: 31082.1 Da PI: 9.2207 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG273500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl
Pavir.6KG273500.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 47.5 | 4e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l
Pavir.6KG273500.1.p 67 RGNFSVKEEKLIIHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MGRPPCCEKA GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF SVKEEKLIIH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLKKKLATMG 120 ADGAGAGGAE ARSGRAAAPK GQWERRLQTD IHTARQALRE ALSLDPVKLP PAKTEPLPQP 180 APAQPSQAAY ASSAENIARL LEGWMRPGTG SAGTKAPSGS RSSASAVSGG EGASASHSGT 240 ARTPEGSTGT SKAEDAGPMP AFSMLESWLL DDGMGHGDAG LMGVPLADPC EFF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT035749 | 1e-149 | BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds. |
GenBank | KJ727881 | 1e-149 | KJ727881.1 Zea mays clone pUT5974 MYB transcription factor (MYB83) mRNA, partial cds. |