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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.6KG272000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 413aa MW: 44418.5 Da PI: 11.319 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6KG272000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 92.7 | 3e-29 | 113 | 166 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
+rlrWt eLH rF av+qLGG++kAtPk++l++m v+gLtl+h+kSHLQkYRl
Pavir.6KG272000.1.p 113 ARLRWTRELHGRFALAVAQLGGADKATPKSVLRAMAVPGLTLYHLKSHLQKYRL 166
7****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MAWPPAARAI FPCRRFAPGG VSIHIPPEVE TEPQPGRNIS PPHRWSPGKG THHPAAYKNR 60
SLAAAVEAKL PPSSVTPAAA ASHAGRAAAA AIRSAALVGT LEMASSCGGE ARARLRWTRE 120
LHGRFALAVA QLGGADKATP KSVLRAMAVP GLTLYHLKSH LQKYRLAVSR GPVATAPGEG 180
SDDRWSSSSE SQPDEHDEDA AAAAEWRGAF AAGGGTKEAP CDSPRSMARM QREVQRKPQE 240
QIEVQRHLQL RIEAQGRYLQ SVLRRAEEVL ADHSLGSPAS AVESGCLSSS SSLSPSPPRR 300
RSAAGAGQEE LPAEPRGRGS RRRRRRRSRG RQLTRDRSQQ VGEEQKTIAI RRFRSISAAC 360
AEHREQGMIG GVASKAGTRL FHQCLMLLQV CNQRLVMLHC KPAATTLLFI IP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 2e-17 | 112 | 167 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-17 | 112 | 167 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-17 | 112 | 167 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-17 | 112 | 167 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-17 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 317 | 326 | RGSRRRRRRR |
| 2 | 320 | 326 | RRRRRRR |
| 3 | 320 | 330 | RRRRRRRSRGR |
| 4 | 321 | 328 | RRRRRRSR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968975 | 3e-71 | EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds. |
| GenBank | KJ726839 | 3e-71 | KJ726839.1 Zea mays clone pUT3379 G2-like transcription factor (GLK6) mRNA, partial cds. |
