PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG256400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 298aa    MW: 32518 Da    PI: 6.1625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG256400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv  +   G  +W+++++  g+ R++k+c++rw +yl
  Pavir.6KG256400.1.p 14 KGPWTAEEDQKLVSFILGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding52.98.2e-1774111847
                          HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          E++l vd+++qlG++ W++Ia++++ gRt++++k++w+++
  Pavir.6KG256400.1.p  74 EEKLVVDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                          9**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-19562IPR009057Homeodomain-like
PROSITE profilePS5129414.15961IPR017930Myb domain
SuperFamilySSF466897.49E-2611108IPR009057Homeodomain-like
SMARTSM007174.7E-111363IPR001005SANT/Myb domain
PfamPF002492.5E-131461IPR001005SANT/Myb domain
CDDcd001671.68E-81661No hitNo description
PROSITE profilePS5129425.54262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2463116IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1473111IPR001005SANT/Myb domain
CDDcd001676.97E-1274112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFIL GNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SGAEEKLVVD LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPLP PPQQQQEHQP LPPPAGGSPE AQPSPPPERS PPEERAVPAT ATAGNSSEDG  180
DSELLLSKSP GFCTDEVPMM HPDEIMVPLG DQPPPLPASA CAPAAATVST PTTSYSTSTS  240
ASSSWSCSLS RDVESPFAFM DMELPEFVLQ MGLDDVDARW RDCLLPPPVF ENPFDSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG256400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0362291e-171BT036229.1 Zea mays full-length cDNA clone ZM_BFb0101M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973482.11e-149myb-related protein 315
TrEMBLA0A3L6RJU51e-155A0A3L6RJU5_PANMI; Uncharacterized protein
STRINGPavir.Fa00850.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-85myb domain protein 20