PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG240400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 342aa    MW: 36540 Da    PI: 6.3193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG240400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.4e-13139185255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr      +W+A Ir p+e   r+r +lg+f+taeeAa a+++a+ +l+g
  Pavir.6KG240400.2.p 139 QYRGVRC-V---KWEADIRLPRE---RTRLWLGTFDTAEEAALAYDQAAYRLRG 185
                          7999983.3...5*******976...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006142.0E-71969IPR003656Zinc finger, BED-type
PROSITE profilePS508089.6961973IPR003656Zinc finger, BED-type
SuperFamilySSF576674.4E-82263No hitNo description
PfamPF028921.3E-112366IPR003656Zinc finger, BED-type
CDDcd000181.20E-22138195No hitNo description
SuperFamilySSF541711.37E-16139194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-24139195IPR001471AP2/ERF domain
PROSITE profilePS5103217.556139193IPR001471AP2/ERF domain
SMARTSM003801.4E-25139199IPR001471AP2/ERF domain
PRINTSPR003679.2E-6140151IPR001471AP2/ERF domain
PfamPF008473.4E-7140185IPR001471AP2/ERF domain
PRINTSPR003679.2E-6159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAESSTQGRR KQARGNKLAP RSGVWAHFTR LRDDDGKVEC NRCGAQSSAR HGTTSLWKHL  60
NNKKVCSGQE EEADDGAAGG VGAARPPHQD QQPPPLLPAT PPSPAAGAHE HELQLQRSLK  120
PAVPVPPPAA PAPQRPQKQY RGVRCVKWEA DIRLPRERTR LWLGTFDTAE EAALAYDQAA  180
YRLRGDAARL NFPSSAASLV PLDPAAEAKL QAAIAAASSK NAMARRKATP INLVASPSNS  240
SSDDDASRSG SDDETTYLPA GSQQQTLGSF DDEASESGSD DETTYLQAES HSQQQALGSA  300
SDEASESGSD DETTYLLGSQ QQHWVPPPAK PQIPDRTTRT R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-131391931472Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG240400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J19681.1.p2e-94(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.18e-14ERF family protein