PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.6KG156900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 153aa MW: 16606.5 Da PI: 8.8386

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG156900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	106.8	1.4e-33	35	123	5	93
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 lP+an+ r+m++v+P+ +is +k+++++c +ef f+t+eas+++++++r+ti ++d++ ++ lGf++yve++++y+++yr Pavir.6KG156900.1.p 35 GTALPMANIERLMRQVIPKGFRISSSSKQLTHDCTVEFACFITGEASEQARAQHRRTIRPEDYISSFEALGFDNYVETMSTYIRRYRGQ 123 578************************************************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-26	34	127	IPR009072	Histone-fold
SuperFamily	SSF47113	8.06E-23	36	128	IPR009072	Histone-fold
Pfam	PF00808	8.6E-15	37	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-6	65	83	No hit	No description
PRINTS	PR00615	2.0E-6	84	102	No hit	No description
PRINTS	PR00615	2.0E-6	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MGRKGKRAAA TKGIRHEDAP PADCASSDGK ERAAGTALPM ANIERLMRQV IPKGFRISSS 60 SKQLTHDCTV EFACFITGEA SEQARAQHRR TIRPEDYISS FEALGFDNYV ETMSTYIRRY 120 RGQQDTAGNG NYALAHATVP PTVAAPDASR ND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-21	38	121	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG156900.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822276.1	6e-62	nuclear transcription factor Y subunit B-1-like, partial
TrEMBL	A0A3L6RHS2	2e-69	A0A3L6RHS2_PANMI; Uncharacterized protein
STRING	Pavir.Fa01360.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	1e-23	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Pavir.6KG156900.1.p