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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.6KG127500.1.p |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 228aa MW: 24557.2 Da PI: 9.7294 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG127500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 101.9 | 5.8e-32 | 44 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89
aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ +
Pavir.6KG127500.1.p 44 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAV 133
7**********************************************9977766************************************ PP
DUF260 90 lkaelallkee 100
l+ae a+l+++
Pavir.6KG127500.1.p 134 LRAENAALRRQ 144
****9999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MYMPLALDVP YMHVHVYACI SLPLPPLHLQ WGRTTGMTGS SGGACAVCKH QRRKCEPNCE 60 LAAYFPAHRM NDFRALHLVF GVANLTKLIK ANATEAARRR AAETLTWEAR WRERDPSEGC 120 YREVSCLRRD NAVLRAENAA LRRQLAEQQQ LLLWSRATAA PTANSNMAGG CYNGSAGGNG 180 LVVAVRPPTH APAAPAAQTM LGGYRGVPVF PATANGRKSA PDAPPSP*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU973222 | 1e-155 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |