PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG127500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24557.2 Da PI: 9.7294 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.9 | 5.8e-32 | 44 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + Pavir.6KG127500.1.p 44 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAV 133 7**********************************************9977766************************************ PP DUF260 90 lkaelallkee 100 l+ae a+l+++ Pavir.6KG127500.1.p 134 LRAENAALRRQ 144 ****9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.732 | 43 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-28 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MYMPLALDVP YMHVHVYACI SLPLPPLHLQ WGRTTGMTGS SGGACAVCKH QRRKCEPNCE 60 LAAYFPAHRM NDFRALHLVF GVANLTKLIK ANATEAARRR AAETLTWEAR WRERDPSEGC 120 YREVSCLRRD NAVLRAENAA LRRQLAEQQQ LLLWSRATAA PTANSNMAGG CYNGSAGGNG 180 LVVAVRPPTH APAAPAAQTM LGGYRGVPVF PATANGRKSA PDAPPSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-16 | 38 | 145 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-16 | 38 | 145 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG127500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973222 | 1e-155 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798343.1 | 6e-93 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A2T7C1Z8 | 1e-91 | A0A2T7C1Z8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I0Y0 | 1e-91 | A0A2T8I0Y0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05697.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-15 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG127500.1.p |