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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.6KG093100.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
HD-ZIP |
| Protein Properties |
Length: 667aa MW: 71517.3 Da PI: 5.7036 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6KG093100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 49.9 | 5.5e-16 | 1 | 43 | 15 | 57 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+
Pavir.6KG093100.1.p 1 MEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 43
799*************************************995 PP
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| 2 | START | 195.7 | 2.1e-61 | 184 | 402 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEE CS
START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakae 80
ela +a++el+++a +++p+W++ + +++++e+ + f+ + + + ea+r+ +vv+m+ lve+l+d+++ ++ + +a+
Pavir.6KG093100.1.p 184 ELAVAAMDELLRMARLDAPLWSTGAagAQLDEEEYGRMFPGGLGprqygLRPEASRDGAVVIMTRDSLVEILMDVNRfaaVFSSIVSRAS 273
57899**********************9***********6655599999999************************88888888888*** PP
EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
t+ev+s+g galq+m++e+q++splvp R+++f+Ry++ ++g+w++vdvS+ds +++p v +++++pSg+li++++ng+sk
Pavir.6KG093100.1.p 274 THEVLSTGvagsynGALQVMSMEFQVPSPLVPtRESYFARYCKNNPDGTWAVVDVSLDSLRPNP----VLKCRRRPSGCLIQEMPNGYSK 359
***************************************************************9....7********************* PP
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
vtwvehv++++r++h+l+r+lv+sgla+gak+wv tl+rqce+
Pavir.6KG093100.1.p 360 VTWVEHVEVDDRSVHNLYRPLVNSGLAFGAKRWVGTLDRQCER 402
*****************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008289 | Molecular Function | lipid binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 667 aa
Download sequence Send
to blast |
MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKNQHERQEN AQLRAENDKL 60
RAENMRYKEA LSTASCPSCG GPAALGEMSF DEHHLRLENA RLRDEIDRIS GIAAKHVGKP 120
MVSFPVLSSP LAAAAARSPL DVVGAFGSAG LGPDPLFGVG TGAGELLRSV STGQLDADKP 180
MIVELAVAAM DELLRMARLD APLWSTGAAG AQLDEEEYGR MFPGGLGPRQ YGLRPEASRD 240
GAVVIMTRDS LVEILMDVNR FAAVFSSIVS RASTHEVLST GVAGSYNGAL QVMSMEFQVP 300
SPLVPTRESY FARYCKNNPD GTWAVVDVSL DSLRPNPVLK CRRRPSGCLI QEMPNGYSKV 360
TWVEHVEVDD RSVHNLYRPL VNSGLAFGAK RWVGTLDRQC ERLASAMASN IPNGDLGVIT 420
SIEGRKSMLK LAERMVASFC GGVTASAAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV 480
LNAATSFWLP VPPKRVFDFL RDETSRSEWD ILSNGGAVQE MAHIANGRDH GNCVSLLRVN 540
SANSNQSNML ILQESCTDAS GSYVVYAPVD VVAMNVVLNG GDPDYVALLP SGFAILPDGP 600
PGAPNGEISA GLEAGGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVC 660
AEGNPQ*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
| Publications
? help Back to Top |
- Lee JH, et al.
Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
Plant Cell, 2008. 20(1): p. 152-67
[PMID:18223036] - Yi J, et al.
OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
J. Exp. Bot., 2016. 67(8): p. 2425-37
[PMID:26912801] - Dou M,Cheng S,Zhao B,Xuan Y,Shao M
The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
Int J Mol Sci, 2016. 17(3): p. 233
[PMID:26927068] - Chou IT,Gasser CS
Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
Plant Mol. Biol., 1997. 35(6): p. 873-92
[PMID:9426607]
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