PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.6KG082300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 409aa MW: 41909.3 Da PI: 7.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG082300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	299	336	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYI+ L Pavir.6KG082300.1.p 299 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 336 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.903	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	297	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-11	297	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-5	297	340	No hit	No description
SMART	SM00353	0.0097	298	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MADHQEVIHP AAAAGAGGAS HGHGGGDWWS TAVSCSPDQL PGFGSGLSPA APADGSNRSR 60 SGNAASSESP GSNSLATGGS SITFQEPAGV ADPGAVATGL AGGWNQPYYL DGSGFHGYMS 120 SSRGDQVHLG LRSPSSNNNS LMLQDPHDPN HQFLSNLGLE LLSSPTSPSG GFRSSSLLRS 180 LTEPAAAAAK PSLGFQQYHQ QTMNQAPSTI REALQFTNST PFWNPSAGFA AAEGAASLGS 240 AAGPPSPGQS RPASLAAKSA LEGAGDSSSI ITKKANTDPT PLKKARTGTP SPLPTFKVRK 300 EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIRFLHQQV GSLSAPYLKN RQQVPHLKVS 360 RDGGEEAAAA AKGDLTGRGL CLVPISSTFG VANETPVDFW SPFGAAFR*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MADHQEVIHP AAAAGAGGAS HGHGGGDWWS TAVSCSPDQL PGFGSGLSPA APADGSNRSR  60
SGNAASSESP GSNSLATGGS SITFQEPAGV ADPGAVATGL AGGWNQPYYL DGSGFHGYMS  120
SSRGDQVHLG LRSPSSNNNS LMLQDPHDPN HQFLSNLGLE LLSSPTSPSG GFRSSSLLRS  180
LTEPAAAAAK PSLGFQQYHQ QTMNQAPSTI REALQFTNST PFWNPSAGFA AAEGAASLGS  240
AAGPPSPGQS RPASLAAKSA LEGAGDSSSI ITKKANTDPT PLKKARTGTP SPLPTFKVRK  300
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIRFLHQQV GSLSAPYLKN RQQVPHLKVS  360
RDGGEEAAAA AKGDLTGRGL CLVPISSTFG VANETPVDFW SPFGAAFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG082300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821266.1	0.0	transcription factor bHLH112-like isoform X1
TrEMBL	A0A3L6PM30	0.0	A0A3L6PM30_PANMI; Uncharacterized protein
STRING	Pavir.Fa02016.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG082300.1.p