PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG056200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 546aa MW: 61065.4 Da PI: 7.0397 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 2.9e-10 | 34 | 60 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++++G C+yG++C F+H+p Pavir.6KG056200.4.p 34 PGEPDCSYYLKFGRCRYGSKCMFNHPP 60 5789*********************96 PP | |||||||
2 | zf-CCCH | 22.4 | 2.1e-07 | 89 | 114 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G Ck+ +C+F+H+ Pavir.6KG056200.4.p 89 PGEPDCSHYVKFGSCKFEMNCRFNHP 114 5789*********************8 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 147 | 172 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t lC+++++ G Ck+G++CkF+H+ Pavir.6KG056200.4.p 147 PGTGLCSYYMQKGVCKFGSNCKFHHP 172 5799*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-5 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.741 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.017 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.281 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-5 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-7 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-6 | 149 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 1.9E-7 | 370 | 447 | IPR004087 | K Homology domain |
Pfam | PF00013 | 1.1E-11 | 384 | 443 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 4.38E-12 | 385 | 452 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.3E-14 | 386 | 448 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.55E-10 | 386 | 443 | No hit | No description |
PROSITE profile | PS50084 | 13.691 | 387 | 442 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-19 | 465 | 543 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 2.34E-17 | 468 | 543 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.9E-17 | 468 | 542 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 17.527 | 469 | 537 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.12E-17 | 472 | 538 | No hit | No description |
Pfam | PF00013 | 1.3E-16 | 473 | 539 | IPR004088 | K Homology domain, type 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MDSKDDGQVP KPTEALRHAA AGEEPELVVH SQRPGEPDCS YYLKFGRCRY GSKCMFNHPP 60 KHWAGQWQRH AIAAGEKQGQ QAAEYPRRPG EPDCSHYVKF GSCKFEMNCR FNHPSRKQVY 120 FPAGACKCNH HEIEEVRLNS LGLPLRPGTG LCSYYMQKGV CKFGSNCKFH HPNRSESEQE 180 KLNADSEGSS QQNFYSILGD IIKPHPDLSP RHAPPPLDLP VPSYLLQQSS KGKEDESFSL 240 TQPRQVYSCP EQSGYQQLAD SHFEPAKQVR YTRDQLLQRR ETQQLVDVSK DILELKQCIE 300 MELHGEDYSW PNNDSNVHTL SYHRYDLADR RERHPRSTAK IPEVASEEKY WDNIDEEKES 360 YGTSGKQEQF CKHDQLRCFE FDSKPQVGVL IGKAGETIRN LQTSSGAKIQ ITKDIDADSS 420 ALTRSVELVG TLASVDKAEQ LIKSVIAEAE AGGSPALIAR GFGSGQSGSE QFEMTVPDNK 480 VGLIIGKGGE TIKGLQTRSG ARIQLIPQHP PEGVTLTERT VRVTGNKKQI EVAKDLIKQA 540 MNQVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1j4w_A | 6e-15 | 387 | 541 | 14 | 174 | FUSE binding protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG056200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041511 | 1e-165 | BT041511.1 Zea mays full-length cDNA clone ZM_BFc0007K14 mRNA, complete cds. | |||
GenBank | BT055115 | 1e-165 | BT055115.1 Zea mays full-length cDNA clone ZM_BFc0016A18 mRNA, complete cds. | |||
GenBank | BT064461 | 1e-165 | BT064461.1 Zea mays full-length cDNA clone ZM_BFc0171I13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0A9CJF8 | 1e-115 | A0A0A9CJF8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa02179.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 3e-30 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG056200.4.p |