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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG040300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20537.1 Da PI: 10.0796 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.2e-14 | 139 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +W+A Ir p+e r+r +lg+f+taeeAa a+++a+ +l+g Pavir.6KG040300.1.p 139 QYRGVRC-V---KWEADIRLPRE---RTRLWLGTFDTAEEAALAYDQAAYRLRG 185 7999983.3...5*******976...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00614 | 4.4E-10 | 19 | 69 | IPR003656 | Zinc finger, BED-type |
PROSITE profile | PS50808 | 10.085 | 19 | 73 | IPR003656 | Zinc finger, BED-type |
SuperFamily | SSF57667 | 4.17E-9 | 22 | 63 | No hit | No description |
Pfam | PF02892 | 1.6E-12 | 23 | 63 | IPR003656 | Zinc finger, BED-type |
CDD | cd00018 | 1.25E-17 | 138 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.5E-19 | 139 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-13 | 139 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-13 | 139 | 186 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.58 | 139 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 140 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-7 | 140 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAESSTQGRR KQARGNKLAP RSGVWAHFTR LRDDDGKVEC NRCGAQLSAR HGTTSLWKHL 60 NKKKVCSGQE EEADDAAAGG VGAARPPHQD QQPPPLLPAT PPSPAAGAHE HELQLQRSLK 120 PAVPVPPPPP PAPQRPQKQY RGVRCVKWEA DIRLPRERTR LWLGTFDTAE EAALAYDQAA 180 YRLRGDA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3997 | 3e-36 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG040300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.J19681.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36060.1 | 5e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG040300.1.p |