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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG032000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LSD |
Protein Properties |
Length: 160aa MW: 16765.2 Da PI: 8.9117 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG032000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 24.4 | 4.8e-08 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
C+gC+ +L+Y rGA+ V+C++C t
Pavir.6KG032000.1.p 7 CSGCKRVLQYRRGATGVCCPSCST 30
**********************98 PP
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2 | zf-LSD1 | 23.8 | 7.5e-08 | 46 | 68 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23
CggC t+L Y rGA ++RC+ C
Pavir.6KG032000.1.p 46 CGGCFTMLVYNRGAANIRCPHCG 68
**********************7 PP
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3 | zf-LSD1 | 25.7 | 1.9e-08 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP+GA+ V C+ C V
Pavir.6KG032000.1.p 84 CGHCRTTLAYPPGASTVGCPTCRCV 108
**********************876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 160 aa
Download sequence Send
to blast |
MQDQLICSGC KRVLQYRRGA TGVCCPSCST FTAANPSGSE MSELVCGGCF TMLVYNRGAA 60 NIRCPHCGRV NSTRSANQIG HLSCGHCRTT LAYPPGASTV GCPTCRCVNP VRNNNSGGSA 120 RPAPSDARPQ TVLVENPKTL DEKGKLVSNV AVGVTSWKR*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |