|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5NG612700.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
Trihelix |
Protein Properties |
Length: 294aa MW: 31596.6 Da PI: 9.7361 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG612700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 73.1 | 4.8e-23 | 28 | 100 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
rWt++e+l+Li+arr me+r + p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k +
Pavir.5NG612700.1.p 28 RWTRHETLVLIQARRAMERRGLPlPVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAA 100
8*******************998345779****************************************9974 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MMSANENSPA VEAAAAAAAS TPRSRLPRWT RHETLVLIQA RRAMERRGLP LPVRPRPKWA 60 AVSAYCRRHG VERGPMQCRK RWGNLSWDLK KIVAWEGKAA GAAPPQLHES FWDMRGDQRR 120 ARQLPSSFDR EVYDALVCGT SAAAAPPDLG DGELEGVYRQ PPIMVMPISA RKYEPPPASS 180 EHECSGPVTE SDKKAGAAAS DKNSTSQNDG GGGFKDSDAT FVAEAEGATT ATPAATVSIG 240 KQVIEALERG NRALAQQLEA HKSSWRADRE QRAALLGALD RLAGAVARIA DKL*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 1e-162 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |