PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG612700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 294aa MW: 31596.6 Da PI: 9.7361

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG612700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.1	4.8e-23	28	100	1	72
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 rWt++e+l+Li+arr me+r + p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k + Pavir.5NG612700.1.p 28 RWTRHETLVLIQARRAMERRGLPlPVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAA 100 8*****************998345779**************************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.131	21	86	IPR017877	Myb-like domain
SuperFamily	SSF46689	7.18E-5	25	88	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-4	28	85	IPR009057	Homeodomain-like
Pfam	PF13837	4.3E-10	28	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MMSANENSPA VEAAAAAAAS TPRSRLPRWT RHETLVLIQA RRAMERRGLP LPVRPRPKWA 60 AVSAYCRRHG VERGPMQCRK RWGNLSWDLK KIVAWEGKAA GAAPPQLHES FWDMRGDQRR 120 ARQLPSSFDR EVYDALVCGT SAAAAPPDLG DGELEGVYRQ PPIMVMPISA RKYEPPPASS 180 EHECSGPVTE SDKKAGAAAS DKNSTSQNDG GGGFKDSDAT FVAEAEGATT ATPAATVSIG 240 KQVIEALERG NRALAQQLEA HKSSWRADRE QRAALLGALD RLAGAVARIA DKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG612700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728031	1e-162	KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819294.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A3L6PT15	0.0	A0A3L6PT15_PANMI; Trihelix transcription factor ASR3-like
STRING	Pavir.Ea03865.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13972	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-35	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG612700.1.p