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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5NG584900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 340aa MW: 35664.5 Da PI: 6.038 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG584900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.5 | 2e-31 | 152 | 208 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
+Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h
Pavir.5NG584900.1.p 152 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLVVTYEGPHLH 208
7******************************************************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MGDVLHPQAG AGDVQAFWPG DLDEQLITEL LSDDSLLLSA LQQPPAGSDS EHGSVDTGAS 60 PAAAPAPCDS GAAEQELLPQ PEAVSRALCS VYTGPTIRDI EMALSTSRPS YPWSSRRYSP 120 IHLIGSRFGA ASRAPESKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH PRSYYKCTSS 180 RCGAKKHVEK STDDPEMLVV TYEGPHLHGP QPLFPRRQWA SVDLSGAAAV AAAAKKQQDK 240 NPSPAASSAA PARASDDAGG WPPNDDHKMT CSDAEGAPGN GRAEDAAARR HLAATADSCD 300 GGSTASVPAA TVLTCDSPPT TWSCPDFPFA WSPEAPLLL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP101616 | 1e-94 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |