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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG562400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 31072.9 Da PI: 8.7061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.7e-14 | 143 | 187 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ ++lG g+W+ I+r + ++Rt+ q+ s+ qk+ Pavir.5NG562400.1.p 143 PWSEEEHRLFLEGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 187 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.898 | 136 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.46E-17 | 138 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 139 | 191 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 140 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-11 | 140 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-11 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.33E-10 | 143 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MHTVASRCSR CGDGCGHSSM ACRVAATAGQ RRGEAATMRC GGGAAAGLRL FGVQLGAAAG 60 GAASPALQLH KSYSVDCLNL QGSAPAYAAR VTAPLLLSPS PSTALLLSID ECSTERATDG 120 GGYLSDDGAR GGTALRERKK GVPWSEEEHR LFLEGLEKLG RGDWRGISRG FVTTRTPTQV 180 ASHAQKFFLR QNSAGKNSNA KRRSSLFDLV QNCEGGLVSD PSDGKAAATS ESLYPKALCD 240 VYRKESTAIH ARMTRPSSES APVSEKVTVA TEQAHGYHCS PLNLELGMSL TTPSIGT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31968 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG562400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184673 | 3e-80 | KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807743.1 | 1e-168 | transcription factor MYBS3-like | ||||
TrEMBL | A0A3L6R709 | 1e-177 | A0A3L6R709_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J35324.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4932 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 6e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG562400.1.p |