PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG548200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 553aa    MW: 59548.2 Da    PI: 4.8397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG548200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-164390148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Pavir.5NG548200.2.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
                         79******************************************9986 PP
2Myb_DNA-binding52.79.9e-1796139146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Pavir.5NG548200.2.p  96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016935.5E-2551552IPR016310Transcription factor, GAMYB
PROSITE profilePS5129416.6253890IPR017930Myb domain
SuperFamilySSF466894.87E-3140137IPR009057Homeodomain-like
SMARTSM007172.1E-144292IPR001005SANT/Myb domain
PfamPF002491.1E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234497IPR009057Homeodomain-like
CDDcd001672.68E-114590No hitNo description
PROSITE profilePS5129425.65691145IPR017930Myb domain
SMARTSM007172.1E-1795143IPR001005SANT/Myb domain
PfamPF002496.9E-1696139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2698143IPR009057Homeodomain-like
CDDcd001677.04E-1398139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK  60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR  120
MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND  180
LLSGNSLYLP DFTSDNFIAN TEALPYAPQL SAASISNLLG QSFASKNCSF MDQADQSGML  240
KQSGYVLPAL SDTVDGVLSS VDQFSNDSEK LKQALGFDYL NEANASSKSI TPFGVTLSGS  300
HAFLNGIFSA SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPIAT  360
PSVKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC  420
QEYLDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK  480
HDTAGSPHPE NLRPDALFSG NTADPSSFND AIAMLLGNDM NAEPKPVLGD GIAFGSSSWG  540
NMPHACEISE FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32391433106B-MYB
1h8a_C2e-323914323126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.229920.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG548200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339250.0BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds.
GenBankBT0626920.0BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds.
GenBankBT0638280.0BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds.
GenBankHQ8587500.0HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819835.10.0transcription factor GAMYB-like
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A2S3HQQ90.0A0A2S3HQQ9_9POAL; Transcription factor
TrEMBLA0A2T7DFC70.0A0A2T7DFC7_9POAL; Transcription factor
STRINGPavir.Ea03206.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-87myb domain protein 33