PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG539900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 261aa    MW: 28702.7 Da    PI: 12.1152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG539900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18123171456
                  AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Pavir.5NG539900.1.p 123 RGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 171
                          9******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.206121178IPR001471AP2/ERF domain
SMARTSM003801.1E-30121184IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-21122180IPR016177DNA-binding domain
PRINTSPR003672.0E-8122133IPR001471AP2/ERF domain
PfamPF008471.3E-11123170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-30123180IPR001471AP2/ERF domain
CDDcd000186.04E-24129180No hitNo description
PRINTSPR003672.0E-8144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGKEARPRPQ PDKPCCHGCA PRPISRGRIT SNHRPQKAPP HQPTSALRLY LSALALSQRH  60
PKQNAHQTPA HARTLPHPTK SYGLSGLEST DGSHVNGSAE PWGSRRRLRR WRGEGRRRRR  120
RARGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPVEAALA YDRAARTLRG AKAKTNFPDS  180
AGAHSHRGQH LRTAPLPRRP PPQAVTFGGV GIGCPSPWHF VYLLPPAAVA ATPPPSTALE  240
LRTGQSRGGL PFDLNEAPSC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18123178763ATERF1
3gcc_A2e-18123178763ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104120RRRLRRWRGEGRRRRRR
2111120RGEGRRRRRR
3115122RRRRRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG539900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282616e-84KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818539.12e-71ethylene-responsive transcription factor 4-like
TrEMBLA0A2S3HQX65e-70A0A2S3HQX6_9POAL; Uncharacterized protein
TrEMBLA0A2T7DFL85e-70A0A2T7DFL8_9POAL; Uncharacterized protein
STRINGPavir.Eb03165.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-22ERF domain protein 12