PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG533900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 489aa    MW: 50673.8 Da    PI: 9.9658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG533900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002243265223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ Cg+ F  ++ L+ H  + H
  Pavir.5NG533900.1.p 243 SCHRCGEQFGKWEALEAHHLSkH 265
                          7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
SuperFamilySSF563991.31E-21267487No hitNo description
Gene3DG3DSA:3.90.228.101.5E-11291463IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGERRRRGSA AAAAAPGGGV ARVAEEEKAA AAAPGKGPPP TVWFALKRSL HCRSEPSEVH  60
VPRAKAAGPA AGAGHLSSIA TKRAAPRSGC SRSIANLRDV IHGSKRHPGQ PPSCSPRSIG  120
SSEFLNPIAH EVVLSTNSRC ELKITGFGGC GGLGAVGTAA QAADGAVVSS FVGTLRPGTP  180
GPAWAGHGLH YCGSMRAGGV RCTPPRSPNV LLERNGSVPA AGHRASCEEA AKADAGKGSG  240
GLSCHRCGEQ FGKWEALEAH HLSKHAVTEL VEGDSSRKIV EIICRTSLLK SESSCVRIER  300
VFKVHNTQRT LSRFEEFREA VKLKASKLPK KHPRCLADGN ELLRFHGATL SCALGSGGGA  360
SSGSSSSLCA SDKCAVCRII RHGFSARKEG KAGVGVFTTS TSGRAFESIE APPPAGDDGE  420
PAAARKALLV CRVIAGRVHK PLENLREFAG QTGFDSLAGK VGPYANIEEL YLLNPRALLP  480
CFVVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG533900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818591.10.0uncharacterized protein LOC112894954
TrEMBLA0A2T7DFT00.0A0A2T7DFT0_9POAL; Uncharacterized protein
STRINGPavir.Eb03434.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-139C2H2 family protein