PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG524300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 283aa    MW: 31275.6 Da    PI: 11.0736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG524300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-11109157455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h +rEr RR+r+ ++f+ L  llP+     s K  K +i+  Av YI++L+
  Pavir.5NG524300.1.p 109 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 157
                          599***********************7...69*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-1496170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.414105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-10107173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8109157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-6111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MADDDDEDYL MSLFLVLPPE LPAGSAFEAY QRRRRRPTLL ESRLMMTGRG RSGAGANVHR  60
RMFGYLRRVV RRGAAAGTVH PAPADDEATT LVRPPPSQPP RPRSSSRFRH IMRERLRRER  120
LSQGFADLHA LLPPGASSKG GKNDIVGAAV GYIRELEGRK GWLRARNQEL LERAATRWSG  180
GAARNAAAGG DMVVKVRAES QDRAAAVDAF ETVLLRLKAM AALRVTDIRS CFCTGGMWMN  240
VGVEGQEQDI LEGRNNEERR GGLHILEKIR LTTSNCSHRQ DP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.182189e-59stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG524300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818224.11e-111transcription factor BHLH148-like
TrEMBLA0A2T7DG281e-110A0A2T7DG28_9POAL; Uncharacterized protein
STRINGPavir.J18322.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432