PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.5NG522500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 318aa MW: 34464.4 Da PI: 9.5642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG522500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.2e-10	113	161	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ s K K +i+ Av YI++L+ Pavir.5NG522500.1.p 113 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAVGYIRELE 161 599*********************7...69***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-14	100	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.414	109	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-10	111	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-8	113	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	115	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MADDDDQADD EDYLMSLALV LPPELPAGSA FEAYQRRRGR PTLLESRLMM TGRGRSGAGA 60 NVHRRMFGYL RRVVRRGAAA GTVHPAPADD EATTLVRPPP SQPHRPRSSS RFRHIMRERL 120 RRERLSQGFA DLHALLPPGA SSKGGKNDIV GAAVGYIREL EGRKGWLRAR NQELLERAAT 180 RWSGGAARNA AAGGDMVVKV RAESQDRAAA VDAFETVLLR LKAMAALRVT DIRSCFCTGG 240 MWMNVGVEGQ VSTREVDEAI TNALMGLAGT PGNGLGIIQI QLDFGTWTLL DLDLVAYGHS 300 FCVGCDRIGL CWIKSIG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG522500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818224.1	1e-124	transcription factor BHLH148-like
TrEMBL	A0A2T7DG28	1e-123	A0A2T7DG28_9POAL; Uncharacterized protein
STRING	Pavir.J18322.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32

Link Out ? help Back to Top
Phytozome	Pavir.5NG522500.1.p