PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG463900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 323aa MW: 35068.4 Da PI: 10.2226 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.8 | 1.2e-12 | 18 | 103 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++ + ++r r+ +qCk++ + l+k+yk+++++ + s ++++ Pavir.5NG463900.1.p 18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADTVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFYG 101 7*******************************************999999********************9998775......3466666 PP trihelix 84 ql 85 ql Pavir.5NG463900.1.p 102 QL 103 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-23 | 16 | 104 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADTVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDLLVGPT LAGGGNGAKK 120 PSPPRAAMAV FRRRKSPSRS PSPQSPPPLP MALPLPNYRR GSDLPSANLI HKAAAAAAAA 180 AAESDSEDGY NNNNDYDDDD GSQQSPTRSE SSRSGGGAAA APAVGSKRKM SSGSGGFGEL 240 ARAIETFAEM YERMEAAKQR HAEEMERQRI KFLKDLELKR MQTFVDMQLQ LARAKHARKG 300 DASSEMLMSL AALPFLSSPA YL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8822 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG463900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458303.1 | 1e-169 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2T7DIJ9 | 0.0 | A0A2T7DIJ9_9POAL; Uncharacterized protein | ||||
STRING | Sb03g030880.1 | 1e-169 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 1e-29 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG463900.1.p |