 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.5NG454300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
RAV |
| Protein Properties |
Length: 375aa MW: 39334.4 Da PI: 10.0707 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5NG454300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 38.6 | 2.6e-12 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++ a+++++g
Pavir.5NG454300.1.p 72 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEAEAARAYDVAAQRFRG 120
78****9888.8*********......44**********99*************98 PP
|
| 2 | B3 | 95.2 | 4.4e-30 | 200 | 292 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F
Pavir.5NG454300.1.p 200 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDaAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGF 289
89******************************95556799*******9999*************************************** PP
EE- CS
B3 83 kld 85
+++
Pavir.5NG454300.1.p 290 YRS 292
954 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MDSASSLVVD DTSGGGACRD KLRALAAAAA EGATLERMGS GASAVVDAAE PGAEADSGSA 60
GHAGAGGKLP SSRYKGVVPQ PNGRWGAQIY ERHQRVWLGT FAGEAEAARA YDVAAQRFRG 120
RDAVTNFRPL ADADPDAAAE LRFLASRSKA EVVDMLRKHT YFDELAQNKR AFAAATSSLA 180
GAHSPSFAPP SPARAREHLF DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGGESKGV 240
LLNFEDAAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LQAGDVVGFY RSAAAAGADS 300
KLFIACRLRP SGVTASTAPV AEPSSAPVAK AVRLFGVDLL TAPAPAMAGC KRARDLAAPP 360
QAAFKKQLVE LALV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 2e-49 | 196 | 310 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 2e-49 | 196 | 310 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098298 | 0.0 | FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence. |
