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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG389900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27738.9 Da PI: 6.2182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 219 | 241 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +F+++ +++ H+++H Pavir.5NG389900.1.p 219 YTCKLCNATFTTPQTYHGHMSLH 241 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 219 | 241 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 2.7E-4 | 219 | 238 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 221 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDPSSYPRRD TSFIQSDDTF TPLHQDLWGQ TTMPTLSSSV PNAHAPKEPN MLLNNDYSFQ 60 TYYSNIDAPP PQPHPVFTQP PPTSTITSAR FQSPAENEQE LMHTFLTIPV GKFLRDKTAT 120 LHAHLDIVGA LDPGPIFQDP SSDILKEEMR KPLASSSSHC DPYEKMSYVK PTYLGQSPMT 180 YHVQREQQVL STNIPSGNIN YAIGATMNSA FEFSEVQHYT CKLCNATFTT PQTYHGHMSL 240 HNKGLSSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG389900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457384.2 | 2e-52 | uncharacterized protein LOC8060818 | ||||
TrEMBL | A0A2T7DLZ1 | 1e-135 | A0A2T7DLZ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01312.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19398 | 6 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG389900.1.p |