PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG377100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 230aa    MW: 24235.8 Da    PI: 6.0253
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG377100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30141199159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gC+vkk+ver+++d  +v++tY g Hnh+
  Pavir.5NG377100.1.p 141 LDDGYRWRKYGKKMVKNSPNPRNYYRCSREGCQVKKRVERARDDACFVITTYDGVHNHP 199
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-33126199IPR003657WRKY domain
SuperFamilySSF1182901.31E-27134200IPR003657WRKY domain
PROSITE profilePS5081131.054136201IPR003657WRKY domain
SMARTSM007744.7E-35141200IPR003657WRKY domain
PfamPF031068.5E-24142199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSSYESLLSL SPEGYWIGGG EFGGGSDVEA AAAASSFLSF DIGVVYHPPE PAAFQAEEQP  60
APALVDALQA ETDCRASGVA GSSSDGGEPG EQSQTEASAL SSEGDGGSGF TTSAGGAGGL  120
PHVPARKKKI AFKTRSDVDV LDDGYRWRKY GKKMVKNSPN PRNYYRCSRE GCQVKKRVER  180
ARDDACFVIT TYDGVHNHPV APPPPPPAPR GYQRLLDPPP PPAQAHRVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-24132200876Probable WRKY transcription factor 4
2lex_A8e-24132200876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG377100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085229e-86AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418469e-86AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313679e-86CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817842.16e-90probable WRKY transcription factor 50 isoform X2
TrEMBLA0A2T8ILC91e-88A0A2T8ILC9_9POAL; Uncharacterized protein
STRINGPavir.Eb02454.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-37WRKY DNA-binding protein 50