PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG358300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 420aa MW: 47998.1 Da PI: 9.2921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG358300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.6	2.4e-14	12	91	2	81
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 f+ +Y+ + GF+vrk++++k++ +g+it+ +fvC +e +r +k++ ++ +raetrt+C+ ++++k+++ ++ +v+++ Pavir.5NG358300.1.p 12 FWLRYGGHRGFEVRKRYTNKRESDGKITSCKFVCANESHRVADKRD-PLTKCPRAETRTDCQVHMNLKLDRkKEILKVSDI 91 999*************************************9999.9999****************986666677665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-10	12	90	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.953	189	225	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-6	200	227	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.6E-4	201	222	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MEFGSSDEAW AFWLRYGGHR GFEVRKRYTN KRESDGKITS CKFVCANESH RVADKRDPLT 60 KCPRAETRTD CQVHMNLKLD RKKEILKVSD IYKHFKFDFD IIRFFKHFER VVQGKRNNEL 120 DSELNSRKKL PKICMKRPPP MLSQASKLYT PPIFEAFQGE YERSLAACTN AFDGNNEYLI 180 AHCIYEEEYK VIGDPMKQTV TCSCQQFDRI GILCGHALKV LNLMNIKSLP PQYVGTVQDN 240 QGRNIIENPK MDAMLRFIFM SHKFLNLAHR VANFPECTML VDSTLDTLGK QIEDKINAYT 300 GTFEDPTTVP TNATSPNELL INARLKKKDV QTKSSKQQRN WLDKKPKSGK KRKSKATSQG 360 KKQCVSGYLA LQGSIIDDFD GEQALMDKEK DSNEKMALKS FTQLLTGPIS DDLLTGDLL*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MEFGSSDEAW AFWLRYGGHR GFEVRKRYTN KRESDGKITS CKFVCANESH RVADKRDPLT  60
KCPRAETRTD CQVHMNLKLD RKKEILKVSD IYKHFKFDFD IIRFFKHFER VVQGKRNNEL  120
DSELNSRKKL PKICMKRPPP MLSQASKLYT PPIFEAFQGE YERSLAACTN AFDGNNEYLI  180
AHCIYEEEYK VIGDPMKQTV TCSCQQFDRI GILCGHALKV LNLMNIKSLP PQYVGTVQDN  240
QGRNIIENPK MDAMLRFIFM SHKFLNLAHR VANFPECTML VDSTLDTLGK QIEDKINAYT  300
GTFEDPTTVP TNATSPNELL INARLKKKDV QTKSSKQQRN WLDKKPKSGK KRKSKATSQG  360
KKQCVSGYLA LQGSIIDDFD GEQALMDKEK DSNEKMALKS FTQLLTGPIS DDLLTGDLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.44074	1e-142	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG358300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695546.1	1e-140	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q6RYE2	1e-132	Q6RYE2_TRIMO; Putative transposase
STRING	BRADI2G01705.1	1e-131	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4651	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	6e-14	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Pavir.5NG358300.1.p