PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG350100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 438aa    MW: 46326.2 Da    PI: 5.95
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG350100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.3e-151149341
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         i n ++r  tf kR++g+ KKA ELSvLC+++va+++++
  Pavir.5NG350100.1.p 11 IPNRRQRAGTFGKRKEGLKKKAGELSVLCGVDVALVVAA 49
                         67999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.12E-17179IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.446149IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-15163IPR002100Transcription factor, MADS-box
CDDcd002666.21E-14239No hitNo description
PRINTSPR004046.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-141148IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGRRKVSLGL IPNRRQRAGT FGKRKEGLKK KAGELSVLCG VDVALVVAAA GDGSGAADVW  60
ESREGVLARY RALGAEARAR HTHRAYLAAE LSKWEAKLAR VRQGGPDALA RWDRALDGIA  120
TAEEARRLLD AIDAAMRAAK DRRRALGLPP ADDAEDGVVL DGVEPLNFAA AGDLHAPGGD  180
ANNDQQAMWD GNGFHFQQGG AAEMQHTGYG FQQYTSGSGA GVEGYQQQMA PDMYSSGDHN  240
NGHLAHAYQQ YQPRDPMQHG YGFQCAHDSC FDANASYAQL SLPMWSADEP RHDMLPLEYP  300
SADAGLNYAD TPAAQGVGRS SFAMGAASGI FVHSPPALSL AMGTAPGAGG DFVNNSPPAA  360
APSYTTGGSG DNFTNAMPAQ PLVDMSYGGD LTIAGRYVAQ WQASPHPQRA GGDQRPSIEH  420
LHYLSDLEDT QLHLCGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG350100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.10.0developmental protein SEPALLATA 3-like
TrEMBLA0A3L6R0J30.0A0A3L6R0J3_PANMI; Uncharacterized protein
STRINGPavir.Eb02360.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960