PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG348800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 128aa    MW: 13824.6 Da    PI: 10.2842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG348800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.1e-202256135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Pavir.5NG348800.1.p 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                         ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-131674IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.1381652IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-131957No hitNo description
Gene3DG3DSA:3.30.50.109.7E-162157IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-172256IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
CDDcd002026.04E-132257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGSADRSEID GIAVAERGAR GCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG  60
LDHKQQQQLR QQHNGEVKTE VKDSSSSSSG SSNLQAVQKR RLLMGVEEAA LLLMTLSSSP  120
TSTLLHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.27941e-174callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG348800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814363.14e-73GATA transcription factor 23-like
SwissprotQ8LC594e-17GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A2T7DM744e-73A0A2T7DM74_9POAL; Uncharacterized protein
STRINGPavir.Eb02364.1.p5e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-18GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]