PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG329600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 183aa    MW: 19373.8 Da    PI: 8.5321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG329600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000295880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cg+ F++   L  H  +H
  Pavir.5NG329600.1.p 58 FVCKTCGRAFTSFQALGGHRTSH 80
                         89**********99998888777 PP
2zf-C2H211.80.00072117139123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F     L  H+r+H
  Pavir.5NG329600.1.p 117 HECHICGLGFELGQALGGHMRRH 139
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-45381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-65880No hitNo description
PfamPF139127.7E-105882IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8035885IPR007087Zinc finger, C2H2
SMARTSM003550.215880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-6112139No hitNo description
PfamPF139122.0E-9116142IPR007087Zinc finger, C2H2
SMARTSM003550.6117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKHPREQQPQ EEVSLALALS TADSCTTTSD SSAGAPPAAK RARRRRGPVV ATSGEGEFVC  60
KTCGRAFTSF QALGGHRTSH LRGRHGLELG VGAKALRQHK AAGGGGDKQE KQQHQTHECH  120
ICGLGFELGQ ALGGHMRRHR EEMGAAEAAD AWVWRSVARL PEELEVQSAA AAGPPVLLEL  180
FA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG329600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795976.16e-89zinc finger protein ZAT5-like
TrEMBLA0A3L6S7X85e-99A0A3L6S7X8_PANMI; Zinc finger protein ZAT12-like
STRINGPavir.J00894.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.14e-20C2H2 family protein