PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG313900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 429aa    MW: 46723.9 Da    PI: 6.793
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG313900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-131259249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +ie  + r  tf kRr g++K A+ LS+L++++vav++ s++ ++  +
  Pavir.5NG313900.1.p 12 FIEGCRSRGLTFFKRRSGLFKAASDLSTLTGVRVAVVLESENERFSSF 59
                         788889999*********************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-9262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.068363IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-5525IPR002100Transcription factor, MADS-box
CDDcd002669.92E-15671No hitNo description
SuperFamilySSF554551.57E-14873IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151259IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MPKRGRRSGV SFIEGCRSRG LTFFKRRSGL FKAASDLSTL TGVRVAVVLE SENERFSSFG  60
TPDANPIVDA FLSGGVPTES DTSEEQKAKI TNLQNELFQL EKDKAMADKK QKENMVRIKE  120
VQETSRTAKY AYGKEEDLDA TELYEMYRKL TWVMQEIKDY CSPSLLRDNH VEAGDRLRDP  180
SLLQPRWWRS LASQCAPPPN YSPLSLSQAS FQQHPWSSTS HPVLARSGSS LPNPLMLPSQ  240
QHPLAPRTPS SILRLQAPPP KEAYPYNYHI HGLGINGNNS HPFSLFPVSS SPPQPSSLQT  300
PPSNGSSPPL LSPQLSSPPH LDESLEFSFN PQNYNFVQPP HNYANASSPL IPSHQPFYSS  360
SLGLNDDLEN TVGNGGQTCG GHGKGFDLST TQQGHGGAGV MLESSAAGES SGAGNTGSNL  420
GDFNFPCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG313900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815415.10.0transcription factor RLM1-like
TrEMBLA0A2S3HU130.0A0A2S3HU13_9POAL; Uncharacterized protein
STRINGPavir.Eb02038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-11AGAMOUS-like 62