PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG289600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 503aa    MW: 59810.6 Da    PI: 9.2474
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG289600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.91.6e-086455090
                 FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                          er t++  +t+ k++++++++ ++ w+vt+l+leHnH ++
  Pavir.5NG289600.1.p  6 AERDTNVLVKTNYKCCMVISER-KDIWRVTRLQLEHNHLMS 45
                         68999****************9.9**************886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-6645IPR004330FAR1 DNA binding domain
PfamPF105511.9E-34164257IPR018289MULE transposase domain
PROSITE profilePS509669.458431467IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6442469IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEEITAERDT NVLVKTNYKC CMVISERKDI WRVTRLQLEH NHLMSPGTKY FRAHKNMTDQ  60
EKKKIRTLHK CNIPTKKMMY LLSFLRGGLG ATPYRDKDIT NYRGKISRET NQNDIMQALM  120
YLTKKKEEDP SFYFRFLVDS THKVKCIFWT DPRSIRYYQN FGDCVSFDTT YLTNKYRMPF  180
APFAGITGHG LTCIFGCALI SDETTDTFKW LFQTFLEAVG GKEPISIMTD QDGTMRSAIA  240
QIFPNASHRS CVFHIKEEFK DIIDNSLTKE EFETLWQQMI QKHEIQHIKY FQDIYNTRET  300
WAPVWFKQEF YPFINTTSRS EGTNARYKRN VGPQYSITSF LKEYERIQET IYDNERQADH  360
ETNIKKKSKL WSNYCIEQQA QEAYNLKIFK KFQWQLRCAT KLQADELEKG KLYKVYTTPD  420
HPFKEFRSRT YIVAADQQNQ DFSCICAKFQ KDGMLCCHIL KVMVNNDISK IPEKYIIDRW  480
RKKEQKMLLL SDTIIFHSWQ RK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG289600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439945.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_021319297.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ01LB70.0Q01LB7_ORYSA; OSIGBa0145N07.10 protein
TrEMBLQ8H3L30.0Q8H3L3_ORYSJ; Putative far-red impaired response protein
STRINGPavir.J19355.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-79FAR1-related sequence 5