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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5NG269500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 272aa MW: 28800.8 Da PI: 8.0867 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG269500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd+ lv ++ q+G g+W+ ar g++R +k+c +rw++yl
Pavir.5NG269500.1.p 13 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCMLRWLNYL 60
79********************************************97 PP
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2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg T+ Ed + ++++ lG++ W+ Ia++++ gRt++++k++w++
Pavir.5NG269500.1.p 66 RGCITPAEDAAIRELHASLGNR-WSMIAAHLP-GRTDNEIKNYWRT 109
6788******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGRMCGGEPA VRKGPWTLEE DLVLVGYISQ HGEGSWDNLA RAAGLNRNGK SCMLRWLNYL 60 RPGVRRGCIT PAEDAAIREL HASLGNRWSM IAAHLPGRTD NEIKNYWRTR IQRRPAPVAS 120 AQQRQPYRAP ATATATAAAM AASEGASSSS SAAASHGSSA AGDWWSYSYV GPNHPEQGAH 180 RSQKSKSVAA AAAAGVDSGS ASSALTSRDS STTTAGVDGH MQTSYSDRYY YSELSSAAAA 240 ADGVKMVDAD SFWNVVDDFW GTLPVPDATL F*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728193 | 1e-112 | KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds. |