PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG260900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 553aa    MW: 57703.8 Da    PI: 8.7865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG260900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0590112123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F r  nL+ H r H
  Pavir.5NG260900.1.p  90 FVCEVCNKGFQREQNLQLHRRGH 112
                          89*******************88 PP
2zf-C2H211.80.00075167189123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +++
  Pavir.5NG260900.1.p 167 WKCDKCSKRYAVQSDWKAHSKVC 189
                          58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-689112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-789112No hitNo description
PROSITE profilePS5015711.09490112IPR007087Zinc finger, C2H2
PfamPF121713.6E-590112IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004190112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355290132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4155187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-7162187No hitNo description
SMARTSM00355140167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HQEQIKPLLA QPHQQLPPAP LLSAAASSSA PGSAQAAAAS  60
PPVKKKRTLP DPDAEVIALS PKTLLATNRF VCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ  120
KDPLQAQRRR VYLCPEPTCA HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS  180
DWKAHSKVCG TREYRCDCGT LFSRRVGTGL TPNCQDTTFR NYTLQSMMSW RDSFITHRAF  240
CDALAQESAR LPPPGLTASH LYGATTAANM ALSLSQVGSH LASTLGGDAH GHHYHQADLL  300
RHGAANRFDH HLLGPSSASA FRPLPPPPSS AFLMGAPHEF IDGGDGTGSH AFLQGKAFQG  360
LMHLPDLQGN GAGGGPLASS APGLFNLGYI ASSANSSGTS SHGHASQGHL TSDQFSEGGG  420
AGGAGGSETS AAMLFSGGGG FAGGDHQVAP GGMYNDQAVM LPQMSATALL QKASQMGSNS  480
SAHGGGASVF GGLVGSSVPS AAHGRAPMLD QSQMHLQSLM NSLAGGGMFG GGANSGGMID  540
PRMYDMDQDV KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29163251365Zinc finger protein JACKDAW
5b3h_F1e-29163251365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45241e-151callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG260900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418000.0BT041800.1 Zea mays full-length cDNA clone ZM_BFb0057K19 mRNA, complete cds.
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807955.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_025807961.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_025807969.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGPavir.J10227.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.15e-97indeterminate(ID)-domain 12