PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG224400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 239aa    MW: 25869.4 Da    PI: 4.4647
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG224400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.46.3e-131693098
                NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  Pavir.5NG224400.3.p  1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 69
                         899*************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.9E-18168IPR009072Histone-fold
PfamPF008087.1E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.05E-18171IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRTYEITLQS GAKTLNSFHL KQCVKRYSSF  60
DFLTEVVNKV PDLGGADSCG DERGLPRRRK SNGSDPENDE SRSSKMVIRS ANISPRGRGR  120
GRGRGRGRPP TKRKEVGYVQ FEDESGMFAE QGEPLPGDET VPESNHSNEN ITQSAEPPVE  180
APAPAAAPGA SKVEEAYTDH QSDWPMPDAA IGNIGVGPSG FGHLTVQVDE DEDYDNED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-151542174Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589PRRRK
2117126RGRGRGRGRG
3117127RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.140630.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG224400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979427.11e-142dr1-associated corepressor
TrEMBLK3ZJL51e-141K3ZJL5_SETIT; Uncharacterized protein
STRINGPavir.Eb02146.1.p1e-175(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-39nuclear factor Y, subunit C11