PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG224400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 256aa    MW: 27865.9 Da    PI: 4.9823
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG224400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.73.1e-197861998
                NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         +++P arikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  Pavir.5NG224400.1.p  7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 86
                         579************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.7E-26372IPR009072Histone-fold
SuperFamilySSF471133.28E-204107IPR009072Histone-fold
PfamPF008085.9E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK  60
TLNSFHLKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER GLPRRRKSNG SDPENDESRS  120
SKMVIRSANI SPRGRGRGRG RGRGRPPTKR KEVGYVQFED ESGMFAEQGE PLPGDETVPE  180
SNHSNENITQ SAEPPVEAPA PAAAPGASKV EEAYTDHQSD WPMPDAAIGN IGVGPSGFGH  240
LTVQVDEDED YDNED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106PRRRK
2134143RGRGRGRGRG
3134144RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.140630.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG224400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979427.11e-156dr1-associated corepressor
TrEMBLK3ZJL51e-154K3ZJL5_SETIT; Uncharacterized protein
STRINGPavir.Eb02146.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.19e-52nuclear factor Y, subunit C11