PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG213800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 261aa    MW: 28398.7 Da    PI: 6.7412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG213800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05231253123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+ sF+++ ++  H+++H
  Pavir.5NG213800.1.p 231 YKCKLCDASFTTPQTYYGHMSLH 253
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.432231258IPR007087Zinc finger, C2H2
SMARTSM003550.0091231253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPSSYPTKD MSFSQSDDNI SPLHQALRGK MTMPTLSSSG PNAHAPKESN MILANDHSFQ  60
RFYSNSEAPP LQPHPGLTHA PPTSTLASAG LVQSTTENEQ ELMHSFLTIP VGKFLSPPSI  120
TSLLQGNKTA ILHAHLDITG ASNSDPIFQD LASGIPEEKE MEKLLWSSSS QGNSNGKMSY  180
VKPTYSGQFP MFSHVQRQQQ VPSIVNQGSN SSDAIRAAID KTFEFTEVQR YKCKLCDASF  240
TTPQTYYGHM SLHSKGMSSN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG213800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457384.29e-54uncharacterized protein LOC8060818
TrEMBLA0A2T7DN891e-146A0A2T7DN89_9POAL; Uncharacterized protein
STRINGPavir.J21200.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1939869