PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG207200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 581aa    MW: 60333.1 Da    PI: 7.5389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG207200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30289347259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pavir.5NG207200.1.p 289 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKSILVTTYEGHHNHP 347
                          7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32273349IPR003657WRKY domain
SuperFamilySSF1182902.62E-27281349IPR003657WRKY domain
PROSITE profilePS5081128.759283349IPR003657WRKY domain
SMARTSM007745.9E-36288348IPR003657WRKY domain
PfamPF031069.1E-26290347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
METKPERHRH DHVHEEGGED AATMAHGALS LHHRGAALFG HQRHDEELVA AGRRGEIREV  60
DFFSRDSGAR RQQDDGRGGR RVPGGGRDDV NIGLDLLTTA TAAAASAGDE EVTAAKNHKM  120
EASAVEAELR RVVDENRRLR GILEELTRNY GTLYQQLLQV TQHHPHQHHH PDLMNNRSSL  180
LPHHTHLNAM GAPTTSTTRQ LLEARASSTA QTQPDAGAED EASDGAGEAS PSLSNNAGNN  240
DSDGKRKMSQ DGAPPPPREN GEQAASSAEL PGRKARVSVR ARSEAPMISD GCQWRKYGQK  300
MAKGNPCPRA YYRCTMAVAC PVRKQVQRCA EDKSILVTTY EGHHNHPLPP AATTMANTTS  360
AAAAMLLSGP ATSRDGAAAL LGHHHTAAAL FHHHASIPYA STMATLSASA PFPTITLDLT  420
QAPAAGGGLL AHGLQRPPVG MIHPAAAAGP AMPFAVPPPL AMFLPQRAPA AAAMPAGLVA  480
RQQQQSVMET VTAAIAADPN FTTALAAAIS SVMAGGGAHQ GQPAATPRGS NIGVAGEATI  540
GGGEGAAPAA PTTTAAGAHA ASGSPRFATQ SCTTSTTRGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20275351176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785GGRRVPGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.257640.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG207200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814260.10.0probable WRKY transcription factor 31
TrEMBLA0A2S3HW160.0A0A2S3HW16_9POAL; Uncharacterized protein
STRINGPavir.Eb01185.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.18e-59WRKY family protein