PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG195000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 32610.2 Da PI: 6.5039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.8e-15 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+ +v+ +G g+W+ g++Rt+k+c++rw++yl Pavir.5NG195000.1.p 30 RGPWTAEEDALLAGYVAAHGEGRWNELTLAAGLRRTGKSCRLRWLNYL 77 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Pavir.5NG195000.1.p 83 RGGFTPREQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEVKNYWRT 126 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.136 | 25 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-30 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-9 | 32 | 77 | No hit | No description |
SMART | SM00717 | 2.7E-14 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.08 | 82 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.8E-15 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 85 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.41E-12 | 86 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEMDAQWMSP SGGSISLPSS AAAAAAELRR GPWTAEEDAL LAGYVAAHGE GRWNELTLAA 60 GLRRTGKSCR LRWLNYLRPG VRRGGFTPRE QLLILDLHSR WGNRWSKIAA HLPGRTDNEV 120 KNYWRTRVQK HAKQLGCDVG SGRFHDAMRN LWMPRLLERI HADESAAAGD ASHYFHAASP 180 AHAPPSQPAY PNAAAPTSSC ARATSPDAAS CVTGSPSPWE ASPAAQFQTS SPSMPAWSTE 240 QCQNGCSSAT SGGDMFDESW SELLARANHD DADSAGLPGF GLLGETGDSL WSLDDIWQQP 300 LC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 27 | 124 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG195000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952438 | 1e-174 | EU952438.1 Zea mays clone 1280407 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817284.1 | 1e-180 | transcription factor JAMYB-like | ||||
Swissprot | Q2QZJ8 | 2e-79 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A3L6SN40 | 1e-179 | A0A3L6SN40_PANMI; Myb-related protein Myb4-like | ||||
STRING | Pavir.Eb01219.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-73 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG195000.1.p |
Publications ? help Back to Top | |||
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