PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG191200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 541aa MW: 58273.8 Da PI: 6.378

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG191200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.2	3.7e-33	73	130	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++++l+cprCdstntkfCy+nnys qPr++C++C+ryWt+GG+lrnvPvG rr+++ Pavir.5NG191200.1.p 73 PDAILPCPRCDSTNTKFCYFNNYSPDQPRHYCRGCKRYWTHGGTLRNVPVGCKRRNKE 130 67899**********************************************9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-21	65	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-29	75	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.506	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MDADSKSGKG EDGLQAISSE HEKMEADSKS EEAKNGLQAI NSQHGEMGAD SKSEEVKTDS 60 DGSGQEKAVF KKPDAILPCP RCDSTNTKFC YFNNYSPDQP RHYCRGCKRY WTHGGTLRNV 120 PVGCKRRNKE PYKRHFPTQP YDYTTAANGH VPATSSSQSV RPGPAKENEA IAASGSEVVL 180 PKSTSPVPDT TEQKNTTHVS LGPGDDKEQK SGLPPAVASG SSENPVPEKV GNYISGYRNG 240 VTVPPPLTQS YPAAVTAYTD FSTDGAQGLG HSEVSPLSLL LSTMSDLGIR APAVPFPQPQ 300 VAPPFWGRNP GWPNGAWSVP RPASSVTTMP YPSQNTMPSL PQNTMPYPSQ NTMPSLPQNT 360 MPYPSQNTMP SLPQNTMPYP SQNTMPSLPQ NTMPYPSQNT MPSLPQFSMP YLQGSFTMPN 420 LAQGSVTMPH LAENSVASSG SSSLTLTLGK HPREADSQEE EKAEETFWVP KALRITDPEE 480 AAKSSIWDSL GIKPDKRLFC KCCHSKNLKN GKTPESPESV QANPAVFSGP SDISGEDLHM 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MDADSKSGKG EDGLQAISSE HEKMEADSKS EEAKNGLQAI NSQHGEMGAD SKSEEVKTDS  60
DGSGQEKAVF KKPDAILPCP RCDSTNTKFC YFNNYSPDQP RHYCRGCKRY WTHGGTLRNV  120
PVGCKRRNKE PYKRHFPTQP YDYTTAANGH VPATSSSQSV RPGPAKENEA IAASGSEVVL  180
PKSTSPVPDT TEQKNTTHVS LGPGDDKEQK SGLPPAVASG SSENPVPEKV GNYISGYRNG  240
VTVPPPLTQS YPAAVTAYTD FSTDGAQGLG HSEVSPLSLL LSTMSDLGIR APAVPFPQPQ  300
VAPPFWGRNP GWPNGAWSVP RPASSVTTMP YPSQNTMPSL PQNTMPYPSQ NTMPSLPQNT  360
MPYPSQNTMP SLPQNTMPYP SQNTMPSLPQ NTMPYPSQNT MPSLPQFSMP YLQGSFTMPN  420
LAQGSVTMPH LAENSVASSG SSSLTLTLGK HPREADSQEE EKAEETFWVP KALRITDPEE  480
AAKSSIWDSL GIKPDKRLFC KCCHSKNLKN GKTPESPESV QANPAVFSGP SDISGEDLHM  540
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG191200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818008.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2T7DNM1	0.0	A0A2T7DNM1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DNQ8	0.0	A0A2T7DNQ8_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QYN5	0.0	A0A3L6QYN5_PANMI; Uncharacterized protein
STRING	Pavir.Eb01147.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-28	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.5NG191200.1.p