PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG109500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 376aa    MW: 40817.8 Da    PI: 6.1949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG109500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06219238120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C+ C+k+F+r  n++ H+
  Pavir.5NG109500.1.p 219 FICHVCNKTFNRYNNMQMHM 238
                          89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-5215242No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-5287323No hitNo description
Gene3DG3DSA:3.30.160.607.4E-4290323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGLRACAMEG GDAVGSPFFQ WLKPPRSSSS SASMAAAASG QQVVVLGEEG RAGGGAEEAS  60
SMTCLPLLSR LGEGKGADDH HEQCPVKEEI AMSGASIGDL AQSGVDLNIG LPMGGPCIED  120
AVMDDKDVDE EEEEEEGNEV EEEDDEDEGE EWKHVHGGCK VEGMDQQHEH GEVVASVVEG  180
SNNNGLGEFG VVGAESGLPI GCRYWIPTPA QILIGPVQFI CHVCNKTFNR YNNMQMHMWG  240
HGREYRKGPE SLKGTQTLAM LKLPCYCCAP GCKNNVGHPR ARPLKDFRTL QTHYKRKHGA  300
KPFSCRRCAK PFAVKGDWRT HEKNCGKRWF CACGSDFKHK RSLNDHARSF GAHHRPVDDP  360
AAAAVAGEVR RFHHI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50048e-57callus
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG109500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819090.10.0protein TRANSPARENT TESTA 1-like
SwissprotQ8W0301e-92ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A2S3HPS70.0A0A2S3HPS7_9POAL; Uncharacterized protein
STRINGPavir.J31116.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-92WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]