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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5NG106900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 297aa MW: 32722.8 Da PI: 9.7969 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG106900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 30 | 73 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
WT+eE +++ +a + l + +W+ +ar ++ gRt ++++++ +
Pavir.5NG106900.1.p 30 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 73
*****************99************.**********986 PP
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2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
Pavir.5NG106900.1.p 144 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 188
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MMRETYMEVL PPMDHIASRN GWYHPALRIW TAEENKQFER ALAGLDLRCP DWEQVARAIP 60 GRTVREVVHH FKSLEVDVQQ IENGMVPIPF YGAGAGAGGS FTLQWNGNGG GGPGDFRHGY 120 RFGGGCGKRH PGRTPEQERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NFVQTRTPTQ 180 VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLTDDRPPSP SQSSLITNQS NASAPTTAVG 240 HFSLTADAKQ NGAASFPFNS PSRTPVMPTF GMGLQDQGLQ CGPLHDQLVG NPSMLF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |