PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG080200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 264aa    MW: 29078.2 Da    PI: 8.218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.8e-151052244
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          i n+s r   + kR +g++KK +EL +LC+++++v+++++ g
  Pavir.5NG080200.1.p 10 WITNDSARRAAYKKRCKGLMKKTSELATLCGVKACVVVYGEGG 52
                         699*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.839152IPR002100Transcription factor, MADS-box
CDDcd002663.20E-27283No hitNo description
SuperFamilySSF554554.19E-21394IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MARKKVNLKW ITNDSARRAA YKKRCKGLMK KTSELATLCG VKACVVVYGE GGAQPEVWPS  60
PPEARRVLQK FKAMPEVGRF KKAQSQEDFI QSRISKLRDQ VCKLDLANRE HETSRLLHES  120
MDGGRPGLIC SNVEELANLR WMVEKKMARV KELLQQQIAS QVALPKHPAS SSAHPQPQAS  180
HTEMQMLAEP EELQPLQQDW PTDLQAPADG GIGDVVCNAI ASTSNGCASP SSNGGDMTQT  240
PHNLDFCSGF PWTQDVFPLS PME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819100.11e-161agamous-like MADS-box protein AGL80
TrEMBLA0A3L6SSK81e-163A0A3L6SSK8_PANMI; Agamous-like MADS-box protein AGL80
STRINGPavir.Eb00487.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-29M-type_MADS family protein