PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG053800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 479aa    MW: 50158 Da    PI: 8.7999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-067597123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ Cgk F r  nL+ H r H
  Pavir.5NG053800.1.p 75 YVCEVCGKGFQRDQNLQLHRRGH 97
                         9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-77497No hitNo description
Gene3DG3DSA:3.30.160.604.5E-67597IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00817597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8227597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM0035538117147IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.6E-7147172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MMLKDLAAIQ QQQQQHMAAD ENMSNLTSAS GDLASVSSHP LPPPAKKKRS LPGNPDPDAE  60
VIALSPRTLM ATNRYVCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRNPKE AVRKKVYVCP  120
EPGCVHHDPA RALGDLTGIK KHFSRKHGEK KWKCDRCAKR YAVHSDWKAH SKVCGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAEESARA VTAAAAAVAG QHHPGMLFSQ GAGGDEGAAA  240
GGLHLPAVQD QSQPLGGHGM SLQELCLKRE QQQFAPAWLT AQQQHLELQA AGSGSVAVFG  300
SARALDPDYI GSSTPESTAQ PAGLGFGFSP SSAAATASAH MSATALLQKA AQMGATLSRP  360
SNQGQMASTH STSTTSAATA NAAGNVPSTG AGAVGFGASH HFGADERTRA DRDAGSGGNA  420
AVGAGAGGGN GGLTRDFLGL RAFSHGDILS MAGFDPCMSS PSSAAYEQGH QSSKQWHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33148209364Zinc finger protein JACKDAW
5b3h_F5e-33148209364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101114KLKQRNPKEAVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG053800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673585.10.0protein indeterminate-domain 7
SwissprotQ9LRW71e-123IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A3L6R1260.0A0A3L6R126_PANMI; Uncharacterized protein
STRINGPavir.Eb00288.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]