PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG041300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 264aa    MW: 27979.5 Da    PI: 8.6093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG041300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.73.1e-10128149122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDg++WrKYG+K vk+s++pr
  Pavir.5NG041300.1.p 128 LDDGFKWRKYGKKAVKSSPNPR 149
                          59*******************9 PP
2WRKY49.31e-151792182059
                          S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            r+YYrC+ +gC vkk+ver+ +dp++v++tY g Hnh 
  Pavir.5NG041300.1.p 179 RCRNYYRCSAEGCGVKKRVERDGDDPRYVVTTYDGVHNHA 218
                          579************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-28115148IPR003657WRKY domain
SuperFamilySSF1182901.96E-18120148IPR003657WRKY domain
PROSITE profilePS5081124.639123220IPR003657WRKY domain
SMARTSM007741.8E-27128219IPR003657WRKY domain
PfamPF031066.7E-6129150IPR003657WRKY domain
PfamPF031062.1E-11179217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-28181220IPR003657WRKY domain
SuperFamilySSF1182901.96E-18181220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAPLGLVGH EAYAACSYPQ PAAAAASSYF SPPELVADSG GAVMELAPPM ADYCLPGIMG  60
ARTPDYYCSP PAPVFANGGA AAAENEMMNS MSYVGDDGRM ITMSGSAGNG GRPSPRIGFR  120
TRSEVDVLDD GFKWRKYGKK AVKSSPNPRY ARTRHCRRAH ADSSIGRCLS VALMISDRRC  180
RNYYRCSAEG CGVKKRVERD GDDPRYVVTT YDGVHNHAVP GRGAQRPARS APLVAAPWSA  240
PAAPCDPWGT QLHAAAHSSE SSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG041300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586060.0KU058606.1 UNVERIFIED: Panicum miliaceum WRKY2-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-117WRKY transcription factor WRKY24-like
TrEMBLA0A2S3HYH61e-115A0A2S3HYH6_9POAL; Uncharacterized protein
STRINGPavir.J08526.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-31WRKY DNA-binding protein 51