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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.5NG008500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 467aa MW: 50289.1 Da PI: 6.5922 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5NG008500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 87.6 | 1.2e-27 | 200 | 254 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
k +++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
Pavir.5NG008500.1.p 200 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 254
5689*****************.********************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MLEVSSLRSP SKVDHQRGFV GDHVVFPTSG SVCDDFMVDD NLLDYIDFSC DVPFFDADGD 60
ILPDLEVDPT ELLAEFSSPE TSPTEADGCR VEAKPPDDLR QAAAEEEAVT TSTTVEEKKA 120
DEIINRRMLL GNDDDKLAAA SGSGVTTTRK SVDAEGSSAV TTEEDSAGAG SDTKSSSASA 180
GGHCGKKKAA DKKSSNGKRK VKVDWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIDCLT 240
RHNIASHLQK YRSHRKHLMA REAEAATWAQ KRHHMYAPAA AGGPWVVPTL GFPPPPPPPP 300
LCRPLHVWGH PPTAGVEAAA PPPAMLPVWA RHLAPPRPWA PPVAYWHLQQ HQYNAARKWG 360
PHQAAAAAVT PAMVPRFPVP PHPHPATMYR PPMVVPPPPT TTTTKLADLQ LQLDAHPSKE 420
SIDAAIGDVL VKPWLPLPLG LKPPSMDSVM SELHKQGIPK VPPSSA*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF318579 | 1e-100 | AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds. |
| GenBank | BT062838 | 1e-100 | BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds. |
| GenBank | EU956792 | 1e-100 | EU956792.1 Zea mays clone 1574106 transcription factor ZmGLK1 mRNA, complete cds. |
| GenBank | KJ727689 | 1e-100 | KJ727689.1 Zea mays clone pUT5628 G2-like transcription factor (GLK13) mRNA, partial cds. |
