PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.5NG000200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 144aa MW: 15917.8 Da PI: 9.3161

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG000200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.4	1.1e-08	102	141	1	42
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fY++YA+evGFsvr+ ++kk n++i ++++ s+eg+++ Pavir.5NG000200.1.p 102 EFYKSYAHEVGFSVRVGQHKKG--NEKILFKRYYYSREGYKR 141 6***************9988..8999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-6	102	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEPAAARHAM EFGAASSGIG AISNRSLSAM EPSAVRDVNS SVVDDHAGIT VDARVESHLE 60 RPSTPQHLTT SVSTSDTINT NSKEHLKPKI GMIFDTLKDV EEFYKSYAHE VGFSVRVGQH 120 KKGNEKILFK RYYYSREGYK RRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG000200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655317.1	4e-36	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_006658608.1	4e-36	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A2Y3U3	3e-36	A2Y3U3_ORYSI; Uncharacterized protein
TrEMBL	B8AXF0	6e-35	B8AXF0_ORYSI; Uncharacterized protein
TrEMBL	Q60DY0	2e-34	Q60DY0_ORYSJ; Uncharacterized protein
STRING	Sb01g028975.1	4e-26	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-07	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Pavir.5NG000200.1.p