PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG000200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 15917.8 Da PI: 9.3161 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.4 | 1.1e-08 | 102 | 141 | 1 | 42 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fY++YA+evGFsvr+ ++kk n++i ++++ s+eg+++ Pavir.5NG000200.1.p 102 EFYKSYAHEVGFSVRVGQHKKG--NEKILFKRYYYSREGYKR 141 6*****************9988..8999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-6 | 102 | 141 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEPAAARHAM EFGAASSGIG AISNRSLSAM EPSAVRDVNS SVVDDHAGIT VDARVESHLE 60 RPSTPQHLTT SVSTSDTINT NSKEHLKPKI GMIFDTLKDV EEFYKSYAHE VGFSVRVGQH 120 KKGNEKILFK RYYYSREGYK RRT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG000200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655317.1 | 4e-36 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_006658608.1 | 4e-36 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A2Y3U3 | 3e-36 | A2Y3U3_ORYSI; Uncharacterized protein | ||||
TrEMBL | B8AXF0 | 6e-35 | B8AXF0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q60DY0 | 2e-34 | Q60DY0_ORYSJ; Uncharacterized protein | ||||
STRING | Sb01g028975.1 | 4e-26 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 3e-07 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG000200.1.p |