PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 155aa MW: 17250.2 Da PI: 6.9341

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG753500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143.8	4e-45	31	122	4	95
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +d++lPianv+rimk vlP +akisk+aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre Pavir.5KG753500.1.p 31 HDNLLPIANVGRIMKDVLPPQAKISKHAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYANAMRRYLQRYRES 120 699**************************************************************************************8 PP NF-YB 94 eg 95 e+ Pavir.5KG753500.1.p 121 EE 122 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-41	30	122	IPR009072	Histone-fold
SuperFamily	SSF47113	2.48E-33	32	133	IPR009072	Histone-fold
Pfam	PF00808	2.9E-24	35	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-14	62	80	No hit	No description
PRINTS	PR00615	4.4E-14	81	99	No hit	No description
PRINTS	PR00615	4.4E-14	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSENFDFTGF AQQGQPQPQN LSRDDNSRAG HDNLLPIANV GRIMKDVLPP QAKISKHAKE 60 TIQECATEFI GFVTGEASER CRRERRKTIN GDDICHAMRS LGLDHYANAM RRYLQRYRES 120 EELAAALNSG GGGIQIDVRA ELSIFRGDEQ QGKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-37	31	119	4	92	Transcription factor HapC (Eurofung)
4g92_B	5e-37	31	119	4	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG753500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN974244	1e-96	JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814482.1	1e-97	transcriptional activator hap3-like
Swissprot	O04027	7e-42	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A3L6PLU8	1e-101	A0A3L6PLU8_PANMI; Nuclear transcription factor Y subunit B-4-like
STRING	Pavir.Ea03969.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	3e-44	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Pavir.5KG753500.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]