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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5KG746500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 301aa MW: 32187.2 Da PI: 8.9301 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG746500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 70.6 | 2.8e-22 | 26 | 99 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
rWt++e+l+Li+arr me+r + + p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k
Pavir.5KG746500.1.p 26 RWTRHETLVLIQARRAMERRGLAlpvPVRPWPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKA 99
8*******************99833335889****************************************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MMSANENSPP VEAAAAASTP RSRLPRWTRH ETLVLIQARR AMERRGLALP VPVRPWPKWA 60 AVSAYCRRHG VERGPMQCRK RWGNLSWDLK KIVAWEGKAA GAGAAPPQLH ESFWDMRGDQ 120 RRARQLPSSF DREVYDALVC GTSAAAGEDA AAPPGFGDGE LDGVYRQPPI MVMPISARKY 180 EPPPASSEHE CSGPVTESDK KAGAAASDKN STSQHDGGGF KDSDATFVAE AEGATTATPA 240 AATASIGKQV IEALERGNRA LAQQLEAQTS SWRADREQRA ALLGALDRLA GAVARIADKL 300 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 0.0 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |