PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG737200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 858aa    MW: 95743.5 Da    PI: 7.3989
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG737200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11697.2e-53161285117
                 CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                          k+rwlk++e+++iL n+e ++++++++++p+sgs++L+nr+++ryfr+DG++w+kkk+gkt+ E+he+LKv+++++l+cyYa++++nptf
  Pavir.5KG737200.1.p  16 KTRWLKPQEVLQILRNHELFTVSHNPPQKPPSGSWFLFNRRVLRYFRNDGFEWQKKKNGKTISEAHERLKVDNMDALNCYYARGDKNPTF 105
                          89**************************************************************************************** PP

                 CG-1  95 qrrcywlLeeelekivlvhylev 117
                          qrr+yw+L+ ++e+ivlvhy++v
  Pavir.5KG737200.1.p 106 QRRIYWMLDPAYEHIVLVHYRDV 128
                          ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.4048134IPR005559CG-1 DNA-binding domain
SMARTSM010763.1E-6511129IPR005559CG-1 DNA-binding domain
PfamPF038596.6E-4816128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-6310396IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.27E-11312394IPR014756Immunoglobulin E-set
CDDcd001023.01E-4312396No hitNo description
SuperFamilySSF484032.95E-13518610IPR020683Ankyrin repeat-containing domain
PfamPF136379.4E-9518570No hitNo description
Gene3DG3DSA:1.25.40.201.3E-13520613IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.167521581IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-8521566No hitNo description
SMARTSM002483.3E-4549578IPR002110Ankyrin repeat
PROSITE profilePS5008810.927549581IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-8672763IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0095712734IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858713742IPR000048IQ motif, EF-hand binding site
PfamPF006120.011714733IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017735757IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578736764IPR000048IQ motif, EF-hand binding site
PfamPF006120.002737757IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MQQQGLDIHK LQQVVKTRWL KPQEVLQILR NHELFTVSHN PPQKPPSGSW FLFNRRVLRY  60
FRNDGFEWQK KKNGKTISEA HERLKVDNMD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI  120
VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSQLVLPCP NSSSPGSAEE  180
VSSRTVTINN ESNGRSGSDW IQHKAALRKL EMQLSLEDKE DSYVIAEEVP TNNEHVIFPG  240
IQTGEPDSSA NFEDIFNVLG FSGDHTKETR TDPCPSAIDV LKNSDTWLEE DQLEAILHPA  300
SMALTENQWF DIHEVSPESA FSSEITKVIV LGDFLCNPSH SSLAMLFGDV KVPVEIIQQG  360
AIRCHTPCLN AGKVTMCLID GNGKPCSEAW EFEFHEKPTK SMIDGNEKPC NEAQDIKVHK  420
TPANSNDELL LLINYVQILF DGHDCDVFSQ FSPQLPNPGC GSLVNQMDIM RKTYEQLDPE  480
KTLHSVMEVL LNDKFKQWLS SRCEQNSDGD HLLPKQYHGV IHTIAALGYD LALKPLLSSG  540
VPINYRDPNG WTALHWAARF GREDMVVALL TAGAAAGALS HPTSEDPAAK TPASIALAFG  600
FKGLSAFLSE AQLTTHLDSI ESKENGKCEG KASGGGIRSA VDRISDKSTH VHGGTDDQLA  660
LKDSLGAVRN AVQAAARIQA AYRVFSFKKK KETALQNSCL SVHETVAVSH GMLEKAALSI  720
QKNFRCYKKR KEFLKLRKNV IKIQARVRAH QERKKYKELI RSVGVLEKLM LRWYRKGVGL  780
RGFNSGAMPV DEEVEEDVAK VFRKLRVETA VDEAVSRVSC IIGSPKAMQQ YRRMLQRYQQ  840
AKVNIPKDAS EVPTSKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.123890.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG737200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A3L6SKI10.0A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like
STRINGPavir.J03014.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-102Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains